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Global Network Alignment Method Using Node Similarity Based on Network Characteristics (IPSJ Transactions on Bioinformatics Vol.6)

Global Network Alignment Method Using Node Similarity Based on Network Characteristics (IPSJ Transactions on Bioinformatics Vol.6)
記録メディア記事
HITOSHI AFUSO, TAKEO OKAZAKI, MORIKAZU NAKAMURA<YH247-812>情報処理学会論文誌 論文誌トランザクション2012年度(2):2013.4p.2-8
国立国会図書館全国の図書館

Predicting Three-way Interactions of Proteins from Expression Profiles Based on Correlation Coefficient (IPSJ Transactions on Bioinformatics Vol.5)

Predicting Three-way Interactions of Proteins from Expression Profiles Based on Correlation Coefficient (IPSJ Transactions on Bioinformatics Vol.5)
記録メディア記事
ETSUKO INOUE, SHO MURAKAMI, TAKATOSHI FUJIKI 他<YH247-812>情報処理学会論文誌 論文誌トランザクション2012年度(1):2012.10p.34-43
国立国会図書館全国の図書館
  • 件名protein protein interaction expression profile three-way interaction

IPSJ transactions on bioinformatics

IPSJ transactions on bioinformatics
デジタル雑誌電子書籍・電子雑誌
Information Processing Society of Japan2008<ISSN>
国立国会図書館
  • 並列タイトル等（連結）IPSJ-T Bio キータイトル展開形: Information Processing Society of Japan transactions on bioinformatics
  • 並列タイトル等IPSJ-T Bio キータイトル展開形:Information Processing Society of Japan transactions on bioinformatics
  • その他のタイトル（略タイトル）IPSJ trans. bioinformatics
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DINE : A Novel Score Function for Modeling Multidomain Protein Structures with Domain Linker and Interface Restraints (IPSJ Transactions on Bioinformatics Vol.5)

DINE : A Novel Score Function for Modeling Multidomain Protein Structures with Domain Linker and Interface Restraints (IPSJ Transactions on Bioinformatics Vol.5)
記録メディアデジタル記事
SATORU HIRAKO, MASAFUMI SHIONYU<YH247-812>情報処理学会論文誌 論文誌トランザクション2012年度(1):2012.10p.18-26
国立国会図書館全国の図書館
  • 要約等The functional sites of mul......ding the functional mechanisms o......tal determination of the whole s...... a score function, named DINE, t......ocking simulation. This score function takes into acc......ergy, information about the doma......rmance of DINE on 55 non-redundant know......her in comparison with an existi......The results demonstrate that the domain-interfa...
  • DOI10.2197/ipsjtbio.5.18
  • 件名protein structure prediction protein-protein docking domai...

A Method for Isoform Prediction from RNA-Seq Data by Iterative Mapping (IPSJ Transactions on Bioinformatics Vol.5)

A Method for Isoform Prediction from RNA-Seq Data by Iterative Mapping (IPSJ Transactions on Bioinformatics Vol.5)
記録メディア記事
TOMOSHIGE OHNO, SHIGETO SENO, YOICHI TAKENAKA 他<YH247-812>情報処理学会論文誌 論文誌トランザクション2012年度(1):2012.10p.27-33
国立国会図書館全国の図書館

Differentially Aberrant Region Detection in Array CGH Data Based on Nearest Neighbor Classification Performance (IPSJ Transactions on Bioinformatics Vol.3)

Differentially Aberrant Region Detection in Array CGH Data Based on Nearest Neighbor Classification Performance (IPSJ Transactions on Bioinformatics Vol.3)
記録メディアデジタル記事
YUTA ISHIKAWA, ICHIRO TAKEUCHI<YH247-812>情報処理学会論文誌 論文誌トランザクション2010年度(2) 2011.4p.70-81
国立国会図書館全国の図書館
  • 要約等...number aberrations in genome-wid......nt genomic regions in two or mor......e of those regions. An important......atial correlations among probes, and w......his fact into consideration when we develop a computational algorithm fo......atial correlation among probes. Second, genomic regions with differen......lyzed in a common ground. And fi......, the computational cost can be considerably reduc......e trick. We demonstrate the effe......gh an application to previously ......y CGH data set on 75 malignant lymphoma patient...
  • DOI10.2197/ipsjtbio.3.70
  • 参照...e-wide expression data and biolo......he Generalization of Student's Ratio Comparison of Discrimination Methods for the Classification of Tumors Using Gene Expression Data Circular ......nary segmentation for the analys......mic hybridization, for computational differential......nd genetic regions involved in l......te Generalizations of the Wald-W......le Tests Based on Nearest Neighb......mic Hybridization of Diffuse Lar......ple Test Based on the Number of ......cient Calculation of Interval Sc......is Identification and Characterization of a Novel Gen......q32 Amplification in Malignant L......rray CGH data Nonparametric One-Sided Tests in ...

A Method to Extract Sentences Containing Protein Function Information with Training Data Extension Based on User's Feedback (IPSJ Transactions on Bioinformatics Vol.3)

A Method to Extract Sentences Containing Protein Function Information with Training Data Extension Based on User's Feedback (IPSJ Transactions on Bioinformatics Vol.3)
記録メディア記事
KAZUNORI MIYANISHI, TOMONOBU OZAKI, TAKENAO OHKAWA<YH247-812>情報処理学会論文誌 論文誌トランザクション2010年度(2) 2011.4p.82-90
国立国会図書館全国の図書館
  • 著者標目KAZUNORI MIYANISHI TOMONOBU OZAKI TAKENAO OHKAWA

A Dynamic Programming Re-ranking Approach to Enhance PPI Interactor Extraction (IPSJ Transactions on Bioinformatics Vol.3)

A Dynamic Programming Re-ranking Approach to Enhance PPI Interactor Extraction (IPSJ Transactions on Bioinformatics Vol.3)
記録メディア記事
PO-TING LAI, RICHARD TZONG-HAN TSAI<YH247-812>情報処理学会論文誌 論文誌トランザクション2010年度(2) 2011.4p.91-94
国立国会図書館全国の図書館
  • 著者標目PO-TING LAI RICHARD TZONG-HAN TSAI

A Web Server for Multi-objective Pairwise RNA Sequence Alignment with an lndex for Selecting Accurate Alignments (IPSJ Transactions on Bioinformatics Vol.4)

A Web Server for Multi-objective Pairwise RNA Sequence Alignment with an lndex for Selecting Accurate Alignments (IPSJ Transactions on Bioinformatics Vol.4)
記録メディア記事
AKITO TANEDA<YH247-812>情報処理学会論文誌 論文誌トランザクション2010年度(2) 2011.4p.2-8
国立国会図書館全国の図書館

Computational Identification of Discriminating Features of Pathogenic and Symbiotic Type Ⅲ Secreted Effector Proteins (IPSJ Transactions on Bioinformatics Vol.3)

Computational Identification of Discriminating Features of Pathogenic and Symbiotic Type Ⅲ Secreted Effector Proteins (IPSJ Transactions on Bioinformatics Vol.3)
記録メディア記事
KOJI YAHARA, YING JIANG, TAKASHI YANAGAWA<YH247-812>情報処理学会論文誌 論文誌トランザクション2010年度(2) 2011.4p.95-107
国立国会図書館全国の図書館

Monte Carlo-based Mouse Nuclear Receptor Superfamily Gene Regulatory Network Prediction : Stochastic Dynamical System on Graph with Zipf Prior (IPSJ Transactions on Bioinformatics Vol.3)

Monte Carlo-based Mouse Nuclear Receptor Superfamily Gene Regulatory Network Prediction : Stochastic Dynamical System on Graph with Zipf Prior (IPSJ Transactions on Bioinformatics Vol.3)
記録メディアデジタル記事
YUSUKE KITAMURA, TOMOMI KIMIWADA, JUN MARUYAMA 他<YH247-812>情報処理学会論文誌 論文誌トランザクション2009年度(2) 2010.4p.24-39
国立国会図書館全国の図書館
  • 要約等A Monte Carlo based ......e gene expression data is regard......namical system on a graph. The p......rior distribution is assumed to ......Zipf distribution. Appropriatene...... the Exchange Monte Carlo method...... After validation against synthe......marks are made on the feasibility of the predic...
  • DOI10.2197/ipsjtbio.3.24
  • 参照The large-scale organization of metabolic n......e-wide expression patterns Compr......ve Identification of Cell Cycle–......ray Hybridization Molecular classification of cutaneous m......y gene expression profiling Clonal and Population Analyses Demonstrate That an EGF-Responsive Mammalian Embryonic CNS Precurso......UP-TF interactions modulate reti......nalyze Expression Data Reverse e...... cells Modulation of retinoid si......rt of NGFI-B Cloning, Expression, and Mapping o......e-3 Transcriptional regulation of a Purkinje ......hrough a functional interaction between RORα a......eterodimerization among thyroid hormone recepto...

Algebraic Approaches to Underdetermined Experiments in Biology (IPSJ Transactions on Bioinformatics Vol.3)

Algebraic Approaches to Underdetermined Experiments in Biology (IPSJ Transactions on Bioinformatics Vol.3)
記録メディア記事
HIROSHI YOSHIDA, KINJI KIMURA, NAOKI YOSHIDA 他<YH247-812>情報処理学会論文誌 論文誌トランザクション2010年度(1) 2010.10p.62-69
国立国会図書館全国の図書館

Sparse Learner Boosting for Gene Expression Data (IPSJ Transactions on Bioinformatics Vol.3)

Sparse Learner Boosting for Gene Expression Data (IPSJ Transactions on Bioinformatics Vol.3)
記録メディア記事
MARI PRITCHARD<YH247-812>情報処理学会論文誌 論文誌トランザクション2010年度(1) 2010.10p.54-61
国立国会図書館全国の図書館

Prediction of Protein Folding Rates from Structural Topology and Complex Network Properties (IPSJ Transactions on Bioinformatics Vol.3)

Prediction of Protein Folding Rates from Structural Topology and Complex Network Properties (IPSJ Transactions on Bioinformatics Vol.3)
記録メディア記事
JIANGNING SONG, KAZUHIRO TAKEMOTO, HONGBIN SHEN 他<YH247-812>情報処理学会論文誌 論文誌トランザクション2010年度(1) 2010.10p.40-53
国立国会図書館全国の図書館
  • 著者標目JIANGNING SONG KAZUHIRO TAKEMOTO HONGBIN SHEN

A Comparative Analysis of Metabolic Pathways Based on Metabolic Steady States (IPSJ Transactions on Bioinformatics Vol.2)

A Comparative Analysis of Metabolic Pathways Based on Metabolic Steady States (IPSJ Transactions on Bioinformatics Vol.2)
記録メディア記事
YUTA ASHIDA, TOMONOBU OZAKI, TAKENAO OHKAWA<YH247-812>情報処理学会論文誌 論文誌トランザクション2009年度(1) 2009.11p.83-92
国立国会図書館全国の図書館
  • 著者標目YUTA ASHIDA TOMONOBU OZAKI TAKENAO OHKAWA

AltPS : A Structural Alignment Tool for Protein Surfaces Using Similarity of Local Atomic Environments (IPSJ Transactions on Bioinformatics Vol.3)

AltPS : A Structural Alignment Tool for Protein Surfaces Using Similarity of Local Atomic Environments (IPSJ Transactions on Bioinformatics Vol.3)
記録メディア記事
RYOICHI MINAI, YO MATSUO<YH247-812>情報処理学会論文誌 論文誌トランザクション2009年度(2) 2010.4p.2-9
国立国会図書館全国の図書館

Improved Prediction Method for Protein Interactions Using Both Structural and Functional Characteristics of Proteins (IPSJ Transactions on Bioinformatics Vol.3)

Improved Prediction Method for Protein Interactions Using Both Structural and Functional Characteristics of Proteins (IPSJ Transactions on Bioinformatics Vol.3)
記録メディア記事
TATSUYA YOSHIKAWA, SHIGETO SENO, YOICHI TAKENAKA 他<YH247-812>情報処理学会論文誌 論文誌トランザクション2009年度(2) 2010.4p.10-23
国立国会図書館全国の図書館

A Constrained Gaussian Mixture Model for Correlation-Based Cluster Analysis of Gene Expression Data (IPSJ Transactions on Bioinformatics Vol.2)

A Constrained Gaussian Mixture Model for Correlation-Based Cluster Analysis of Gene Expression Data (IPSJ Transactions on Bioinformatics Vol.2)
記録メディア記事
NAOTO YUKINAWA, TAKU YOSHIOKA, KAZUO KOBAYASHI 他<YH247-812>情報処理学会論文誌 論文誌トランザクション2009年度(1) 2009.11p.47-62
国立国会図書館全国の図書館

Selection of Effective Sentences from a Corpus to Improve the Accuracy of Identification of Protein Names (IPSJ Transactions on Bioinformatics Vol.2)

Selection of Effective Sentences from a Corpus to Improve the Accuracy of Identification of Protein Names (IPSJ Transactions on Bioinformatics Vol.2)
記録メディアデジタル記事
KAZUNORI MIYANISHI, TOMONOBU OZAKI, TAKENAO OHKAWAQ<YH247-812>情報処理学会論文誌 論文誌トランザクション2009年度(1) 2009.11p.93-100
国立国会図書館全国の図書館
  • 要約等...of identification is not high if......ge enough. We consider a method ......data set based on machine learni......orpus usually consists of docume......ore, depending on the target doc......te identification to simply use ......ositive effect on identification and to extend ......method, a portion of a set of ta......d as a validation set. The proce......he identification of protein nam......s in a validation set as feedbac...... Thus, it was confirmed that the proposed metho...
  • DOI10.2197/ipsjtbio.2.93
  • 参照...ing Sentences Containing Protein Function Information Exploiting dom......ntity recognition Accurate unlex......domain adaptation Shallow parsing with conditional random field...... name recognition on biomedical lit......d PCFG adaptation to novel domains

Statistical Comparative study of Multiple Sequence Alignment Scores of Iterative Refinement Algorithms (IPSJ Transactions on Bioinformatics Vol.2)

Statistical Comparative study of Multiple Sequence Alignment Scores of Iterative Refinement Algorithms (IPSJ Transactions on Bioinformatics Vol.2)
記録メディア記事
DAIGO WAKATSU, TAKEO OKAZAKI<YH247-812>情報処理学会論文誌 論文誌トランザクション2009年度(1) 2009.11p.74-82
国立国会図書館全国の図書館